Rowen,
It is quite possible that you may have a crimped fuel line on your hands, easy fix. This is what I was told about removing and especially reinstalling a gas tank. Keep the fuel line from the gas tank as SHORT as possible.
Someone that I know had the exact same problem, early 70's car would quite running, just a few weeks ago. When it was mentioned that he had removed the gas tank and then decided that it would be easier to reinstall it using a longer piece of tubing. You know, he attached a new piece of tube to the tank and the connector and THEN placed the tank back into position. Of course it went in the car much easier that way but the extra length of line crimped, cutting off the normal flow of gas. The tube was then cut to the proper length and problem solved.
I have to admit I have no idea what a separator is so I cannot answer that part of your question. Can someone assist Rowen with that question?
Larry
Enjoy life to the fullest - in a VINTAGE VW